Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0801852.8c.18b.9h with 65 members (sodium channel protein)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia /

Completeness score: 0.37

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

28.9%

This HOG has 3881 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0795766	Opisthokonta	1538		60.1%	9
HOG:E0638856	Hexapoda	58		37.9%	9
HOG:E0671261	Eleutherozoa	5		60.0%	9
HOG:E0119393	Oligohymenophorea	29		31.0%	8
HOG:E0146679	Sar	11		54.5%	8
HOG:E0763178	Bilateria	9		33.3%	8
HOG:E0797028	Opisthokonta	36		27.8%	7
HOG:E0121749	Oligohymenophorea	8		37.5%	7
HOG:E0105256	Paramecium	3		66.7%	7
HOG:E0107847	Paramecium	3		66.7%	7
HOG:E0108810	Paramecium	3		66.7%	7
HOG:E0142214	Alveolata	28		32.1%	6
HOG:E0144363	Alveolata	11		27.3%	6
HOG:E0782813	Eumetazoa	10		30.0%	6
HOG:E0090807	Oomycota	9		44.4%	6
HOG:E0105244	Paramecium	3		66.7%	6
HOG:E0105749	Paramecium	3		66.7%	6
HOG:E0105970	Paramecium	3		66.7%	6
HOG:E0110549	Paramecium	3		66.7%	6
HOG:E0110554	Paramecium	3		66.7%	6
HOG:E0113071	Paramecium	3		66.7%	6
HOG:E0114734	Paramecium	3		66.7%	6
HOG:E0607847	Aculeata	3		66.7%	6
HOG:E0782428	Eumetazoa	23		21.7%	5
HOG:E0827022	Eukaryota	12		25.0%	5

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